01Read it, run it, change it
Models you can start from
Complete programs, small enough to read in one sitting. Take one, change a constant, and see what moves.
02Programs
01
Simple enzyme reaction
Michaelis–Menten written both ways: the two elementary steps, and the single protein abstraction that summarises them.
// =============================================
// Simple Enzyme Reaction Model
// E + S <-> ES -> E + P (Michaelis-Menten)
// =============================================
// binding, reversible, mass-action
reaction R_bind(E + S -> ES, k = 30, kr = 1)
// catalysis, irreversible
reaction R_cat(ES -> E + P, k = 10)
// initial concentrations
E = 1.0, S = 5.0
// --- the same kinetics as one abstraction ---
protein enz(sub -> prod, k = 10, km = 0.3666667)
enz = 1.0, sub = 5.003More
The rest are on the way
Signalling cascades, competitive inhibition and a dosing model are being written up. Until then, the source repository has the working set.